Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015886590.1_cds_XP_016440719.1_36149
CDS Infomation

[gene=LOC107766450] [db_xref=GeneID:107766450] [protein=phosphoglucan phosphatase LSF1, chloroplastic-like] [protein_id=XP_016440719.1] [location=join(16986..17288,18582..18688,18809..19268,19514..19585,20509..20630,20958..21173,21613..21718,21946..22058,22770..22914,23178..23300)] [gbkey=CDS]
Sequence

ATGTATTCATTACAAGTTCCAAATTACAGAGTTTTCGATCACTCTTCAGTTAATTTTTCT
AAGAAATGTGTAATGTACTCGTCATTTTGGGGAGTGGAATTGTGCTTTAGCGATAGACTG
TACAAAGCTAGTATGGCGGTGAATCGACGGGGAAATCGGAGGGTTTATGCGATGTCTACA
ACTAGTGTTTCGCCGTTCAAGATGAATTTGAATGAGTATATGGTTACACTTGAAAAACCG
CTTGGTATTCGCTTCGCTATTTCTGTTGATGGCAAAGTTTTCGTCCATGCTCTTAAGAAA
GGGGGAAATGCCGAGAAAGCAAGAATTATAATGGTTGGTGATACATTGAAAAAGGCAAGT
GACTCTTCGGGCGGGGGGCTAATTGAGATCAAAGACTTCGGCGATATAGAGAAGATGATG
AAAGAGAACTCAGGGCCTTGTAGCCTGGTTCTTGAGAGACCATTTTTCCCATTTCCTATC
CACCAGCTATATCTTATGAATGATATTGATATTCAATATAATAGAGGTCGTGTTCCTGTT
GCTACATGGAACAAAAATTTACTTGCCTCCAACTTGCGAACGCTTGCTGAGGGCAGTGGG
AAATGCGGATTTGTAATATTTTCCCCCAAGTTTCTAGCTTTAAAAGGATGGGAGGTTCTA
AGTGATCAAGAGCAAATCAGGCAACAAGGAAAGCTGAATGGCACCCCTTCTTTACCATTT
AGCCCAATTATCAACATATTCTCTGAGAAAGACATAGGAGATTCTGAATGGACACACGGG
AGTTTCCCATTGGAAGAATATGCGAAGGCGTTGGATCGTTCAAAGGGAGAACTCTATTAC
AATCATGATCTTGGTATCCGTTACAGCAAGATTACGGAGCAAATATATGTGGGATCGTGC
ATACAAAAGGAAGCTGATGTAGAAATGCTGTCAGATGTTATGGGGATCTCCGCTGTACTG
AATTTTCAGAGTGGGATCGAGGCTGAAAATTGGGGAATTAGTGTCAACATAATCAATGAA
TCGTGCCAAAGGTTTAACATCCTTATGATCAACTATCCCATAAGGGAAGGTGATTCATTT
GACATGAGAAAGAAACTTCCGTTTTGCGTTGGTCTTCTTCTACGTCTATTGAAAAAGAAC
CACCGAGTCTATGTGACTTGTACAACTGGTTTTGATAGATCCCCTGCATGTGTAATAGCT
TACCTTCACTGGATGACAGATACTTCCCTTCATGCAGCCTATAATTTTGTTACTGGGTTG
CATTCATGCAAGCCTGACAGACCAGCCATTGCCTGGGCAACATGGGATCTCATAGCGATG
GTGGAAACTGGTGCACATGATGGGCCTGCAACACATGCAGTAACCTTTGTGTGGAACGGA
CACGAGGGGGAAGATGTGTACTTGGTTGGAGATTTTACAGGTAACTGGAAAGAACCAATT
AAGGCAGTCCACAAAGGTGGCCCAAGATTTGAGGCTGAAGTTAGACTATCACAGGGAAAG
TACCTTTATAAGTACATTATCAGTGGAGACTGGAGGCATTCAACCTCTTCACCAACTGAA
AGAGATGAAAGGGGAAATCTCAATAATGTAATTGTTGTTGGTGATGTTGCCAGTGTGAGG
CCTACTGTTCAACAACAAAAGAAGGACGCAACTATTATGAAGGTCATTGAGAGGCCATTG
ACAGAAAATGAGCGCTTCATGCTGGCAAAAGCTGCTCGATGTGTTGCGTTCTCTATCTGC
CCAATAAAGCTAGCACCGAAAAAATAG

Peptide Sequence

PEP ID

XP_016440719.1
PEP Infomation

PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Nicotiana tabacum]
Sequence

MYSLQVPNYRVFDHSSVNFSKKCVMYSSFWGVELCFSDRLYKASMAVNRRGNRRVYAMST
TSVSPFKMNLNEYMVTLEKPLGIRFAISVDGKVFVHALKKGGNAEKARIIMVGDTLKKAS
DSSGGGLIEIKDFGDIEKMMKENSGPCSLVLERPFFPFPIHQLYLMNDIDIQYNRGRVPV
ATWNKNLLASNLRTLAEGSGKCGFVIFSPKFLALKGWEVLSDQEQIRQQGKLNGTPSLPF
SPIINIFSEKDIGDSEWTHGSFPLEEYAKALDRSKGELYYNHDLGIRYSKITEQIYVGSC
IQKEADVEMLSDVMGISAVLNFQSGIEAENWGISVNIINESCQRFNILMINYPIREGDSF
DMRKKLPFCVGLLLRLLKKNHRVYVTCTTGFDRSPACVIAYLHWMTDTSLHAAYNFVTGL
HSCKPDRPAIAWATWDLIAMVETGAHDGPATHAVTFVWNGHEGEDVYLVGDFTGNWKEPI
KAVHKGGPRFEAEVRLSQGKYLYKYIISGDWRHSTSSPTERDERGNLNNVIVVGDVASVR
PTVQQQKKDATIMKVIERPLTENERFMLAKAARCVAFSICPIKLAPKK

Transcript Sequence

Gene sequence data has not been registered.